João Aires-de-Sousa, and Luisa Aires-de-Sousa

REPRESENTATION OF DNA SEQUENCES WITH VIRTUAL POTENTIALS (SEQREP) AND THEIR PROCESSING BY KOHONEN SELF-ORGANIZING MAPS

Bioinformatics, 2003, 19(1), 30-36.

Supplementary Information


Figure S1. Top view of the Kohonen toroidal surface after training with Alu sequences and random non-Alu human sequences. The neurons were assigned to classes on the basis of the sequences that excited them.

 
Figure S2. Top view of the Kohonen toroidal surface after training with HIV-1 env sequences from isolates of different subtypes. The neurons were assigned to classes on the basis of the sequences that excited them.

Table S1. Classification of env HIV-1 sequences belonging to the test set


Archived on 5 August 2002
Located at http://www.dq.fct.unl.pt/qoa/jas/seqrep/bioinf2002

Joao Aires-de-Sousa web site: http://www.dq.fct.unl.pt/staff/jas
SEQREP software web site: http://www.dq.fct.unl.pt/qoa/jas/seqrep
Contact: jas@fct.unl.pt